Overview

Targeted mass spectrometry is a gold standard technique for precise compound quantification and is widely used in industry and clinical laboratories. This powerful technology enables efficient translation from research discoveries to commercial applications. The Mass spectrometry Core Facility supports diverse projects across biology, chemistry and environmental science. The MS Core Facility supports the analysis of diverse sample types, ranging from biological fluids, tissues, and cells to environmental and small-molecule chemistry samples.

The core is expanding into MS-driven proteomics, metabolomics, and lipidomics using advanced mass spectrometry workflows. These approaches analyze proteins, small-molecule metabolites, and lipids, respectively, providing systems-level insight into complex biology and disease.

Targeted Mass Spectrometry

Multiple Reaction Monitoring (MRM) is a targeted mass spectrometry (MS) technique for quantifying small molecules—including lipids, metabolites and chemical compounds. MRM is carried out using triple quadrupole (QqQ) mass spectrometers, a gold standard platform for targeted quantification. In a typical MRM experiment, analytes are first separated by HPLC, then ionized and introduced into a triple quadrupole mass spectrometer, where the first quadrupole (Q1) isolates precursor ions, the second quadrupole (Q2) induces collision‐activated dissociation, and the third quadrupole (Q3) selectively transmits target fragment ions for quantitative detection.

A diagram outlining targetted mass spectrometry. The diagram is split into three quadropoles with ions. Under a heading labelled Q1, Q2, Q3, the ions are getting fragmented and specific to the ion targeted. A graph is displayed with ion intensity versus time.

 

Mass Spectrometry Core Facility Equipment

SCIEX 4500 QTRAP

An image of a blue mass spectrometer

A highly sensitive and reliable hybrid triple quadrupole-linear ion trap (LC-MS/MS) for high-throughput qualitative and quantitative analysis.

Source: Electrospray ionization (positive and negative mode).

Mass range: 5-2000 m/z

Mass Analysers: Hybrid: Quadrupole-linear ion trap

Fragmentation: Collision induced fragmentation (CID)

Agilent 6460

An image of a mass spectrometer, a PC screen displaying graphs and some beakers containing liquid.

A robust and versatile triple quadrupole mass spectrometer capable of supporting multiplexed analysis of analytes with high selectivity and low background noise.

Source: Electrospray ionization (positive and negative mode).

Mass range: 5-3000 m/z

Mass Analysers: triple quadrupole

Fragmentation: Collision induced fragmentation (CID)

For more information, please contact massspec@universityofgalway.ie.